Allelic profile:
Error: check digit format.
| ST | |
|---|---|
| Origin | |
| Sample | |
| ESBL/Carbapenemase | |
| Country | |
| Strain |
No match with ST profile.
Which ST profile has your sequence?, Select your fasta file:
Error: check fasta format.
| ANIm | K.variicola | K.quasivariicola | K.pneumoanie | K.quasipneumoniae |
|---|---|---|---|---|
| Query |
| Allele | Profile | Identity (%) | Overlap (%) | Positions | Hit |
|---|
Enter Query Sequence:
Error: check dna format.
| Allele | Profile | Identity (%) | Overlap (%) | Positions |
|---|---|---|---|---|
| Differences | ||||
| Number | query () | database | ||
Database developed by the Centro de Investigación Sobre Enfermedades Infecciosas (CISEI)
in collaboration with the Centro de Ciencias Genómicas (CCG-UNAM). This site has been
funded by the Instituto Nacional de Salud Pública (INSP).
Reference for citations
of MLST of K. variicola:
Barrios-Camacho Humberto, Aguilar Alejandro,
Beltran-Rojel Marilu, Aguilar-Vera Edgar, Duran-Bedolla Josefina, Lozano Luis, Perez-Carrascal Olga Maria,
Rojas Jesús, Garza-Ramos Ulises (2017). Development of Multilocus Sequence Typing (MLST) scheme for the
characterization of Klebsiella variicola isolates.
Reference for citations of MLST of K. variicola:
Development of Multilocus Sequence Typing (MLST) scheme for the characterization of Klebsiella variicola isolates. Barrios-Camacho Humberto, Aguilar-Vera Alejandro, Beltran-Rojel Marilu, Aguilar-Vera Edgar, Duran-Bedolla Josefina, Lozano Luis, Perez-Carrascal Olga Maria, Rojas Jesús, Garza-Ramos Ulises (2017).Protocol used for MLST of Klebsiella variicola.
Genes of MLST:| leuS | (Leucyl-tRNA synthethase) |
| pgi | (Phosphoglucose iomerase) |
| pgk | (Phosphoglycerate kinase) |
| phoE | (Phosphoporine E) |
| pyrG | (CTP synthase) |
| rpoB | (β-subunit of RNA polymerase B) |
| tonB | (Periplasmic energy traducer) |
PCR Amplification:
| Gene/primer | Sequence (5’-3’) | Annealing (Tm) | Product |
|---|---|---|---|
| leuSKv-F | CGAACAGGTTATCGACGGCT | 63 °C | 594 pb |
| leuSKv-R | CAAAGGTGTCGGTTTCACGC | ||
| pgiKv-F | AAAGAGACCGATCTGGCAGG | 60 °C | 600 bp |
| pgiKv-R | ACCAGATACCGATCAGCGCC | ||
| pgkKv-F | TCGTGATGGATGCTTTCGGT | 63 °C | 444 pb |
| pgkKv-R | AGATTTTGTCAGCGATGCCG | ||
| phoEKv-F | CTGTACGACGTGGAAGCCTG | 63 °C | 453 pb |
| phoEKv-R | CCACGAAGGCGTTCATGTTT | ||
| pyrGKv-F | CCGATCGCTATGGTCGCTG | 60 °C | 522 pb |
| pyrGKv-R | CGGGACATCAGTTCCGGGT | ||
| rpoBKv-F | GCCAGCTGTCCCAGTTTATG | 60 °C | 513 bp |
| rpoBKv-R | GAACGGTACCGCCACGTTTA | ||
| tonBKv-F | GGGGCTGCTTTATACCTCGG | 60 °C | 450 bp |
| tonBKv-R | TGATAGTCATCGTCACGCCG | ||
Conditions of amplification:
PCR: 3 min at 96°C; 30 cycles of 1 min at 95°C; 30 seg annealing temperature (60°C or 63°C according of amplification gene); 1 min at 72°C. Following 7 min at 72°C.
PCR reaction:
Each reaction contains 10ng of chromosomal DNA, 12.5 pmol of each primer, 25mM of the dNPTs, 1X of PCR Buffer, 1 unit of Taq polymerase and water to 50 ml.
Sequencing of PCR products:
The primer used by PCR amplification were used by Sanger sequencing step
Allele template. Allelic profile of K. variicola 801 (GenBank: CDMV01000001):
| leuS (594 bp) |
|
GATCACTGGCCAGACACCGTAAAGACCATGCAGCGCAACTGGATCGGCCGTTCCGAAGGG GTGGAAATCTCCTTTGACGTCAACAACTACGCCGATAAGCTGACCGTCTACACCACCCGT CCGGACACCTTTATGGGCTGCACCTACCTGGCTGTCGCGGCGGGTCACCCGCTGGCGCAG CAGGCTGCAGCGAACAATCCGGCGCTGGCTGCCTTTATCGACGAATGCCGTAATACCAAA GTAGCCGAAGCCGACATGGCGACGATGGAGAAAAAAGGCGTCGATACCGGGTTTAAAGCC ATTCACCCGCTGACCGGCGAAGAAATTCCTGTCTGGGCGGCAAACTTCGTGCTGATGGAA TATGGCACCGGCGCGGTCATGGCCGTTCCGGGTCACGACCAGCGTGACTATGAGTTCGCC AGCAAGTACGGTCTGAACATCAAGCCGGTTATCCTCGCCGCTGACGGCAGCGAGCCGGAT CTCTCCGCGCAGGCGCTGACCGAGAAAGGCGTCCTGTTTAACTCCGGCGAGTTCAGCGGC CTCGATTATGAAGCCGGCTTCAACGCCATTGCCGACAAACTGGCAGCCATGGGC |
pgi (600 bp) |
|
GACCGTGCGGTACTGCACGTCGCGCTGCGCAACCGCAGCAATACGCCGATTGTGGTTGAT GGCAAAGATGTGATGCCGGAAGTGAACGCTGTGCTGGAGAAGATGAAAACCTTCTCAGAA GCGATTATCTCCGGTAGCTGGAAAGGCTATACCGGCAAACCGATCACCGACGTGGTTAAC ATTGGTATCGGCGGTTCCGACCTCGGTCCGTTCATGGTCACCGAAGCGCTGCGTCCGTAC AAAAACCACCTCAACATGCACTTTGTCTCCAACGTCGATGGCACCCACATCGCTGAAGTG CTGAAGAACGTCAACCCGGAAACGACCCTGTTCCTGGTGGCGTCCAAGACCTTCACCACT CAGGAAACCATGACCAACGCCCACAGCGCGCGCGACTGGTTCCTGGCGACCGCGGGCGAC GACAAACACGTGGCCAAACACTTCGCGGCGCTTTCTACCAACGCGAAAGCGGTTGGCGAG TTCGGCATCGACACCGCCAACATGTTTGAATTCTGGGACTGGGTTGGCGGCCGTTACTCC CTGTGGTCGGCGATTGGCCTGTCCATCATTCTCTCCGTGGGCTTCGACAACTTCGTTGAG |
pgk (444 bp) |
|
GCGTGCGCAGGCCCGCTGCTGGCCGCTGAACTGGACGCGCTGGGTAAAGCGCTGAAAGAG CCGGCTCGTCCGATGGTCGCTATCGTGGGTGGTTCTAAAGTGTCCACCAAACTGACCGTG CTGGATTCCCTGTCTAAAATCGCTGACCAGCTGATCGTCGGCGGCGGTATCGCCAACACC TTCGTTGCTGCCCAGGGCCACAACGTCGGTAAATCCCTGTACGAAGCAGACCTGGTTGAT GAAGCTAAGCGCCTGCTGAGCACCTGTGATATCCCGGTTCCGACGGACGTTCGCGTCGCG ACCGAGTTCTCCGAAACCGCAACGGCAACCCTGAAATCTGTTAACGACATCAAAGATGAC GAGCAGATTCTGGACCTTGGCGACGTTTCCGCACAGAAACTGGCCGACATCCTGAAAAAC GCCAAAACCATCCTGTGGAACGGC |
phoE (453 bp) |
|
GATTCCTCTGCCCAGACCGATAACTTTATGACCAAACGCGCCAGCGGCCTGGCGACCTAC CGCAATACCGATTTCTTCGGTCTGGTGGATGGTCTGGATATGACCCTGCAGTACCAGGGT AAAAACGAAGGCCGTGAAGCGAAGAAACAGAACGGCGACGGCGTTGGCACCTCATTAAGC TATGATTTCGGCGGCAGCGACTTCGCCGTCAGCGCGGCCTACACCAGCTCCGACCGTACC AACGATCAGAACCTGCTGGCCCGCGGCCAGGGTTCGAAAGCGGAAGCCTGGGCGACCGGC CTGAAATATGACGCCAACAATATCTACCTGGCGACCATGTATTCTGAGACCCGCAAAATG ACCCCGATCAGCGGCGGTTTTGCCAACAAAGCGCAGAACTTTGAAGCGGTGGCGCAGTAT CAGTTCGACTTCGGTCTGCGTCCGTCCCTCGGC |
pyrG (522 bp) |
|
ACGTCCTTGCGCATCGCACTGATTGGCCGTGAGTCAGACCACCGTCTGGTCTACCCCGCC ACGCTTGGCTCACTGGGTGATGCCGCGGCGTCGCTGGGGCTGAACCTGGAGGTCCATTTC TTCGCGCCGGTCAGTCTGTCCCCTGGGTTACACGACCTCCACGACGTCCAGGGCGTCGTG TTGCCAGGCGGTTCCTCGATGGCCGCCGTCAAGGGACAAATCCGCGTGGCGGAAGATACG CTTGCCCGCGGACAGCCCACGCTGGGGTTATGCCTGGGAATGCAGAGCATGATGACCGCA GTCGTGCGCCGACGTCCGGGTTGCGAATCAGCCATTCCCGCCGAAGTGGCTCCGGATGAG GCTCTGCACAGCTTTGTTCCCTTTGTTGATGGCCGTCATCGCTGCGGCGTATTCCCTTTT TCCTTCGGGTTGATCCCCGGTGATATCCGCGAAATGCACTACAACCATCGCTACTGCTTT AACACCGACTTATTACCGGCGCTGGATCGCAGCGGGGTCAGC |
rpoB (513 bp) |
|
ATCTCCGCACTCGGCCCAGGCGGTCTGACCCGTGAACGCGCAGGCTTCGAAGTTCGAGAC GTACACCCGACGCACTACGGTCGCGTATGTCCAATCGAAACGCCTGAAGGTCCGAACATC GGTCTGATCAACTCCCTGTCCGTGTACGCACAGACTAACGAATACGGTTTCCTTGAGACC CCGTATCGTAAAGTGACCGACGGTGTGGTTACCGATGAAATTCACTACCTGTCTGCTATC GAAGAAGGCAACTACGTTATTGCTCAGGCGAACTCCAACCTGGATGAAAACGGCCACTTC GTAGAAGACCTGGTTACCTGCCGTAGCAAAGGCGAATCCAGCTTGTTCAGCCGCGACCAG GTTGACTACATGGACGTATCCACCCAGCAGGTGGTATCCGTCGGTGCGTCCCTGATCCCG TTCCTGGAGCACGATGACGCCAACCGTGCATTGATGGGTGCGAACATGCAACGTCAGGCG GTTCCGACTCTGCGCGCTGATAAGCCGCTGGTT |
tonB (450 bp) |
|
GCGCCGGCCGATCTTGAGCCGCCCCCGGCGGCACAGCCAGTCGTGGAGCCCGTTGTCGAA CCTGATCCTGAGCCGGAACCCGAGGTGGTGCCTGAACCGCCGAAAGAGGCGCCGGTGGTG ATCCATAAACCGGAACCGAAGCCGAAGCCTAAACCCAAACCGAAACCCAAGCCGGAGAAA AAGGTTGAGCAGCCCAGGCGGGACGTGAAGCCGGCAGCAGAGCCGCGTCCGGCCTCGCCG TTTGAAAACAACAACACGACGCCAGCGCGCACCGCGCCAAGCACCTCGACCGCGGCCGCC AAACCCACCGTTACTGCCCCGAGCGGCCCGCGGGCGATCAGCCGTGTCCAGCCGACCTAC CCGGCCCGCGCCCAGGCGCTGCGCATCGAAGGGACGGTGCGGGTGAAGTTTGACGTGACG CCTGATGGCCGAATCGACAACCTACAGATC |
Sequence comparison:
This page was design for assignation of sequence type (ST) of K. variicola isolates, both for Sanger- and for whole genome-type sequencing technologies. In the case of whole genome sequencing we included, first, the ANI (average nucleotide identity; see references below) analysis for proper identification of bacterial species as: K. variicola, K. pneumoniae, K. quasipneumoniae and K. quasivariicola (this last recently described). Only for K. variicola genomes will be determined the sequence tape (ST). In the other cases determines which of the other species corresponds to those included in the analysis.
This considering the following references:
DNA-DNA hybridization values and their relationship to whole-genome sequence similarities.
Goris J, Konstantinidis KT, Klappenbach JA, Coenye T, Vandamme P, Tiedje JM. 2007.
Int J Syst Evol Microbiol 57:81–91. 10.1099/ijs.0.64483-0.
Taxonomic affiliation of new genomes should be verified using average nucleotide identity and multilocus phylogenetic analysis.
Figueras MJ, Beaz-Hidalgo R, Hossain MJ, Liles MR. 2014.
Genome Announc. 4;2. pii: e00927-14. doi: 10.1128/genomeA.00927-14
Genome misclassification of Klebsiella variicola and Klebsiella quasipneumoniae isolated from plants, animals and humans.
Esperanza Martínez-Romero, Nadia Rodriguez-Medina, Marilu Beltrán-Rojel, Jesús Silva-Sanchez, Humberto Barrios-Camacho, Ernesto Perez-Rueda, Ulises Garza-Ramos.
Salud Publica de Mexico. 2018. 60;1 :56-62.
Download sequences and ST table:
ST table:
| ST | Origin | Sample | ESBL | Country | Accession | Strain | leuS | pgi | pgk | phoE | pyrG | rpoB | tonB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | Human | Blood | SHV-2 | Mexico | CDMV00000000 | 801 | Leus object (1) | Pgi object (1) | Pgk object (1) | Phoe object (1) | Pyrg object (1) | Rpob object (1) | Tonb object (1) |
| 1 | Human | Blood | SHV-2a | Mexico | 25886267 | 812 | Leus object (1) | Pgi object (1) | Pgk object (1) | Phoe object (1) | Pyrg object (1) | Rpob object (1) | Tonb object (1) |
| 1 | Human | Blood | SHV-2a | Mexico | 25886267 | 811 | Leus object (1) | Pgi object (1) | Pgk object (1) | Phoe object (1) | Pyrg object (1) | Rpob object (1) | Tonb object (1) |
| 1 | Human | Blood | SHV-2a | Mexico | 25886267 | 809 | Leus object (1) | Pgi object (1) | Pgk object (1) | Phoe object (1) | Pyrg object (1) | Rpob object (1) | Tonb object (1) |
| 1 | Human | Blood | SHV-2a | Mexico | 25886267 | 808 | Leus object (1) | Pgi object (1) | Pgk object (1) | Phoe object (1) | Pyrg object (1) | Rpob object (1) | Tonb object (1) |
| 1 | Human | Blood | SHV-2a | Mexico | 25886267 | 807 | Leus object (1) | Pgi object (1) | Pgk object (1) | Phoe object (1) | Pyrg object (1) | Rpob object (1) | Tonb object (1) |
| 1 | Human | Blood | SHV-2 | Mexico | 25886267 | 806 | Leus object (1) | Pgi object (1) | Pgk object (1) | Phoe object (1) | Pyrg object (1) | Rpob object (1) | Tonb object (1) |
| 1 | Human | Blood | SHV-2a | Mexico | 25886267 | 805 | Leus object (1) | Pgi object (1) | Pgk object (1) | Phoe object (1) | Pyrg object (1) | Rpob object (1) | Tonb object (1) |
| 1 | Human | Urine | Unknown | USA | QIYN01000001.1 | WUSM_KV_09 | Leus object (1) | Pgi object (1) | Pgk object (1) | Phoe object (1) | Pyrg object (1) | Rpob object (1) | Tonb object (1) |
| 2 | Human | Sputum | Negative | Mexico | CEGG00000000 | 8917 | Leus object (1) | Pgi object (2) | Pgk object (2) | Phoe object (1) | Pyrg object (2) | Rpob object (1) | Tonb object (2) |
| 3 | Plant | Banana root | Negative | Mexico | CXPC00000000 | 6A2 | Leus object (1) | Pgi object (3) | Pgk object (3) | Phoe object (2) | Pyrg object (3) | Rpob object (1) | Tonb object (3) |
| 3 | Plant | Maize shoots | Negative | Mexico | CXOY00000000 | 3 | Leus object (1) | Pgi object (3) | Pgk object (3) | Phoe object (2) | Pyrg object (3) | Rpob object (1) | Tonb object (3) |
| 4 | Human | Abscess | CTX-M-15 | Mexico | CXOZ00000000 | 06-268 | Leus object (1) | Pgi object (1) | Pgk object (4) | Phoe object (2) | Pyrg object (4) | Rpob object (2) | Tonb object (4) |
| 5 | Human | Blood | Negative | Mexico | CXPB00000000 | 4880 | Leus object (1) | Pgi object (4) | Pgk object (5) | Phoe object (3) | Pyrg object (1) | Rpob object (1) | Tonb object (3) |
| 6 | Plant | Sugar cane stem | Negative | Mexico | CXPA00000000 | T29A | Leus object (2) | Pgi object (5) | Pgk object (6) | Phoe object (4) | Pyrg object (5) | Rpob object (1) | Tonb object (5) |
| 7 | Insect | Fungus matrix | Negative | Panama | CP001891.1 | At-22 | Leus object (3) | Pgi object (1) | Pgk object (7) | Phoe object (1) | Pyrg object (6) | Rpob object (3) | Tonb object (6) |
| 8 | Plant | Maize stems | Negative | USA | CP000964.1 | 342 | Leus object (1) | Pgi object (6) | Pgk object (8) | Phoe object (5) | Pyrg object (7) | Rpob object (1) | Tonb object (7) |
| 9 | Plant | Banana root | Negative | China | CP009274 | DX120E | Leus object (1) | Pgi object (6) | Pgk object (9) | Phoe object (1) | Pyrg object (8) | Rpob object (1) | Tonb object (8) |
| 10 | Human | Gut | Unknown | Denmark | CBBA000000000 | CAG:634 | Leus object (1) | Pgi object (4) | Pgk object (10) | Phoe object (6) | Pyrg object (9) | Rpob object (1) | Tonb object (9) |
| 10 | Human | Blood | Unknown | China | NZ_CP030173.1 | 13450 | Leus object (1) | Pgi object (4) | Pgk object (10) | Phoe object (6) | Pyrg object (9) | Rpob object (1) | Tonb object (9) |
| 10 | Human | Wound swab | Unknown | Tanzania | OVDM01000001.1 | KCRI-198C | Leus object (1) | Pgi object (4) | Pgk object (10) | Phoe object (6) | Pyrg object (9) | Rpob object (1) | Tonb object (9) |
| 10 | Human | Sputum | Unknown | Tanzania | OVDP01000001.1 | KCRI-201B | Leus object (1) | Pgi object (4) | Pgk object (10) | Phoe object (6) | Pyrg object (9) | Rpob object (1) | Tonb object (9) |
| 10 | Human | Respiratory | SHV-30 | USA | SRX2681986 | KPN1264 | Leus object (1) | Pgi object (4) | Pgk object (10) | Phoe object (6) | Pyrg object (9) | Rpob object (1) | Tonb object (9) |
| 10 | Human | Urine | Unknown | USA | QIXS01000001.1 | WUSM_KV_30 | Leus object (1) | Pgi object (4) | Pgk object (10) | Phoe object (6) | Pyrg object (9) | Rpob object (1) | Tonb object (9) |
| 10 | Human | Urine | Unknown | USA | QIXM01000001.1 | WUSM_KV_36 | Leus object (1) | Pgi object (4) | Pgk object (10) | Phoe object (6) | Pyrg object (9) | Rpob object (1) | Tonb object (9) |
| 11 | Plant | Banana root | Unknown | China | CP010523 | DSM15968 | Leus object (4) | Pgi object (7) | Pgk object (5) | Phoe object (1) | Pyrg object (10) | Rpob object (1) | Tonb object (2) |
| 11 | Plant | Banana root | Negative | Mexico | 15053318 | F2R9 (ATCC BAA-830) | Leus object (4) | Pgi object (7) | Pgk object (5) | Phoe object (1) | Pyrg object (10) | Rpob object (1) | Tonb object (2) |
| 12 | Human | Faeces | Negative | Brazil | JDWA00000000 | BZ19 | Leus object (5) | Pgi object (8) | Pgk object (11) | Phoe object (1) | Pyrg object (11) | Rpob object (1) | Tonb object (10) |
| 13 | Insect | Nezara viridula | Negative | USA | CP008700.1 | KP5-1 | Leus object (6) | Pgi object (6) | Pgk object (4) | Phoe object (7) | Pyrg object (11) | Rpob object (1) | Tonb object (2) |
| 14 | Human | Pus | Unknown | Malaysia | JRTV00000000 | 223/14 | Leus object (7) | Pgi object (3) | Pgk object (6) | Phoe object (8) | Pyrg object (12) | Rpob object (4) | Tonb object (2) |
| 15 | Plant | Bitter gourd | Unknown | Malaysia | JSWX00000000 | B1 | Leus object (8) | Pgi object (4) | Pgk object (12) | Phoe object (9) | Pyrg object (1) | Rpob object (1) | Tonb object (4) |
| 16 | Plant | Chili | Unknown | Malaysia | JSXA00000000 | CH4 | Leus object (9) | Pgi object (3) | Pgk object (12) | Phoe object (8) | Pyrg object (3) | Rpob object (5) | Tonb object (2) |
| 16 | Human | Urine | Unknown | USA | JMWB00000000 | BIDMC61 | Leus object (9) | Pgi object (3) | Pgk object (12) | Phoe object (8) | Pyrg object (3) | Rpob object (5) | Tonb object (2) |
| 17 | Human | Respiratory | Unknown | USA | AYJK00000000 | MGH20 | Leus object (1) | Pgi object (1) | Pgk object (1) | Phoe object (1) | Pyrg object (4) | Rpob object (1) | Tonb object (2) |
| 18 | missing | Urine | Unknown | USA | AYIX00000000 | MGH40 | Leus object (10) | Pgi object (9) | Pgk object (6) | Phoe object (1) | Pyrg object (13) | Rpob object (1) | Tonb object (11) |
| 19 | missing | Missing | Unknown | USA | AYIF00000000 | UCICRE10 | Leus object (1) | Pgi object (4) | Pgk object (1) | Phoe object (1) | Pyrg object (11) | Rpob object (1) | Tonb object (2) |
| 20 | Human | Urine | Unknown | USA | JCML00000000 | UCI18 | Leus object (1) | Pgi object (10) | Pgk object (2) | Phoe object (10) | Pyrg object (14) | Rpob object (1) | Tonb object (2) |
| 20 | Human | Missing | Unknown | USA | LFAP00000000 | MGH114 | Leus object (1) | Pgi object (10) | Pgk object (2) | Phoe object (10) | Pyrg object (14) | Rpob object (1) | Tonb object (2) |
| 20 | Human | Unknown | Unknown | Germany | UIDW01000001.1 | ID_2 | Leus object (1) | Pgi object (10) | Pgk object (2) | Phoe object (10) | Pyrg object (14) | Rpob object (1) | Tonb object (2) |
| 20 | Human | Unknown | Unknown | Germany | UIDT01000001.1 | ID_5 | Leus object (1) | Pgi object (10) | Pgk object (2) | Phoe object (10) | Pyrg object (14) | Rpob object (1) | Tonb object (2) |
| 20 | Human | Unknown | Unknown | Germany | UIDV01000001.1 | ID_6 | Leus object (1) | Pgi object (10) | Pgk object (2) | Phoe object (10) | Pyrg object (14) | Rpob object (1) | Tonb object (2) |
| 20 | Human | Unknown | Unknown | Germany | UIDM01000001.1 | ID_8 | Leus object (1) | Pgi object (10) | Pgk object (2) | Phoe object (10) | Pyrg object (14) | Rpob object (1) | Tonb object (2) |
| 20 | Human | Unknown | Unknown | Germany | UIDI01000001.1 | ID_11 | Leus object (1) | Pgi object (10) | Pgk object (2) | Phoe object (10) | Pyrg object (14) | Rpob object (1) | Tonb object (2) |
| 20 | Human | Urine | Unknown | USA | QIXC01000001.1 | WUSM_KV_46 | Leus object (1) | Pgi object (10) | Pgk object (2) | Phoe object (10) | Pyrg object (14) | Rpob object (1) | Tonb object (2) |
| 21 | Human | Urine | Unknown | USA | JMZD00000000 | MGH68 | Leus object (11) | Pgi object (5) | Pgk object (5) | Phoe object (11) | Pyrg object (11) | Rpob object (1) | Tonb object (12) |
| 22 | Human | Urine | Unknown | USA | JMZM00000000 | MGH80 | Leus object (11) | Pgi object (3) | Pgk object (6) | Phoe object (12) | Pyrg object (11) | Rpob object (6) | Tonb object (2) |
| 23 | Human | Missing | Unknown | USA | LFBA00000000 | BIDMC88 | Leus object (1) | Pgi object (11) | Pgk object (10) | Phoe object (6) | Pyrg object (9) | Rpob object (1) | Tonb object (9) |
| 24 | Human | Missing | Unknown | USA | LFBC00000000 | BIDMC90 | Leus object (12) | Pgi object (12) | Pgk object (10) | Phoe object (1) | Pyrg object (15) | Rpob object (1) | Tonb object (13) |
| 25 | Human | Missing | Unknown | USA | LFAD00000000 | MGH92 | Leus object (9) | Pgi object (13) | Pgk object (13) | Phoe object (13) | Pyrg object (7) | Rpob object (1) | Tonb object (3) |
| 26 | Human | Missing | Unknown | USA | ACXA00000000 | 1.1.55 | Leus object (9) | Pgi object (10) | Pgk object (13) | Phoe object (13) | Pyrg object (7) | Rpob object (1) | Tonb object (14) |
| 27 | Human | Missing | Unknown | USA | ASQN00000000 | KTE92 | Leus object (11) | Pgi object (6) | Pgk object (5) | Phoe object (1) | Pyrg object (16) | Rpob object (4) | Tonb object (2) |
| 28 | Human | Blood | Negative | Mexico | 15053318 | 1109 | Leus object (1) | Pgi object (1) | Pgk object (4) | Phoe object (2) | Pyrg object (17) | Rpob object (2) | Tonb object (2) |
| 29 | Human | Catheter | Negative | Mexico | 15053318 | 1171 | Leus object (1) | Pgi object (4) | Pgk object (3) | Phoe object (14) | Pyrg object (18) | Rpob object (1) | Tonb object (3) |
| 30 | Human | Secretion | Negative | Mexico | 25886267 | 9351 | Leus object (1) | Pgi object (14) | Pgk object (5) | Phoe object (1) | Pyrg object (19) | Rpob object (1) | Tonb object (2) |
| 31 | Human | Biliary liquids | Negative | Mexico | 25886267 | 9353 | Leus object (13) | Pgi object (15) | Pgk object (1) | Phoe object (1) | Pyrg object (20) | Rpob object (1) | Tonb object (2) |
| 32 | Human | Abscess | Negative | Mexico | 25886267 | 9925 | Leus object (14) | Pgi object (16) | Pgk object (14) | Phoe object (15) | Pyrg object (21) | Rpob object (7) | Tonb object (2) |
| 32 | Human | Blood | Negative | Mexico | 26571390 | 10239 | Leus object (14) | Pgi object (16) | Pgk object (14) | Phoe object (15) | Pyrg object (21) | Rpob object (7) | Tonb object (2) |
| 32 | Human | Sputum | Negative | USA | JVTE01000001 | 1335_KPNE | Leus object (14) | Pgi object (16) | Pgk object (14) | Phoe object (15) | Pyrg object (21) | Rpob object (7) | Tonb object (2) |
| 32 | Human | Blood | Negative | USA | SRX2682028 | KPN700 | Leus object (14) | Pgi object (16) | Pgk object (14) | Phoe object (15) | Pyrg object (21) | Rpob object (7) | Tonb object (2) |
| 33 | Plant | Banana stem | Negative | Mexico | 15053318 | VI | Leus object (15) | Pgi object (6) | Pgk object (6) | Phoe object (1) | Pyrg object (22) | Rpob object (1) | Tonb object (2) |
| 34 | Plant | Rice roots | Negative | Mexico | 15053318 | CFN2006 | Leus object (1) | Pgi object (3) | Pgk object (5) | Phoe object (16) | Pyrg object (1) | Rpob object (8) | Tonb object (2) |
| 35 | Human | Vaginal secretion | Negative | Mexico | 29692906 | 10447 | Leus object (16) | Pgi object (1) | Pgk object (5) | Phoe object (1) | Pyrg object (1) | Rpob object (1) | Tonb object (2) |
| 36 | Human | Missing | Negative | Mexico | This work | 9271 | Leus object (1) | Pgi object (4) | Pgk object (15) | Phoe object (2) | Pyrg object (23) | Rpob object (9) | Tonb object (2) |
| 37 | Human | Missing | Negative | Mexico | This work | 9274 | Leus object (17) | Pgi object (17) | Pgk object (1) | Phoe object (1) | Pyrg object (24) | Rpob object (1) | Tonb object (2) |
| 38 | Human | Missing | Negative | Mexico | This work | 11212 | Leus object (1) | Pgi object (4) | Pgk object (10) | Phoe object (6) | Pyrg object (1) | Rpob object (1) | Tonb object (9) |
| 39 | Human | Missing | Negative | Mexico | This work | 11214 | Leus object (11) | Pgi object (6) | Pgk object (13) | Phoe object (2) | Pyrg object (25) | Rpob object (3) | Tonb object (15) |
| 40 | Human | Missing | Negative | Mexico | This work | 11226 | Leus object (1) | Pgi object (18) | Pgk object (16) | Phoe object (17) | Pyrg object (1) | Rpob object (10) | Tonb object (2) |
| 41 | Human | Missing | Negative | Mexico | This work | 11248 | Leus object (2) | Pgi object (5) | Pgk object (10) | Phoe object (1) | Pyrg object (1) | Rpob object (1) | Tonb object (2) |
| 42 | Human | Missing | Negative | Mexico | This work | 11254 | Leus object (18) | Pgi object (6) | Pgk object (4) | Phoe object (1) | Pyrg object (1) | Rpob object (6) | Tonb object (2) |
| 43 | Human | Missing | Negative | Mexico | This work | 11435 | Leus object (17) | Pgi object (17) | Pgk object (1) | Phoe object (1) | Pyrg object (26) | Rpob object (1) | Tonb object (16) |
| 44 | Human | Missing | Negative | Mexico | This work | 11463 | Leus object (12) | Pgi object (19) | Pgk object (13) | Phoe object (1) | Pyrg object (27) | Rpob object (1) | Tonb object (2) |
| 45 | Human | Missing | Negative | Mexico | This work | 11436 | Leus object (1) | Pgi object (1) | Pgk object (6) | Phoe object (18) | Pyrg object (28) | Rpob object (1) | Tonb object (3) |
| 46 | Plant | Sugarcane rhizosphere soil | Negative | Mexico | This work | KvMx3 | Leus object (2) | Pgi object (5) | Pgk object (17) | Phoe object (19) | Pyrg object (1) | Rpob object (1) | Tonb object (17) |
| 47 | Plant | Sugarcane root | Negative | Mexico | This work | KvMx4 | Leus object (19) | Pgi object (15) | Pgk object (6) | Phoe object (20) | Pyrg object (22) | Rpob object (1) | Tonb object (17) |
| 48 | Plant | Maize rhizosphere soil | Negative | Mexico | This work | KvMx18 | Leus object (11) | Pgi object (10) | Pgk object (18) | Phoe object (1) | Pyrg object (4) | Rpob object (1) | Tonb object (2) |
| 49 | Human | Sputum | Unknown | USA | JVDU01000001.1 | 521_SSON | Leus object (1) | Pgi object (20) | Pgk object (6) | Phoe object (21) | Pyrg object (1) | Rpob object (7) | Tonb object (2) |
| 49 | Human | Bronchoalveolar Lavage | Unknown | USA | JVDR01000001.1 | 524_SBOY | Leus object (1) | Pgi object (20) | Pgk object (6) | Phoe object (21) | Pyrg object (1) | Rpob object (7) | Tonb object (2) |
| 49 | Human | Sputum | Unknown | USA | JUYL01000001.1 | 653_KVAR | Leus object (1) | Pgi object (20) | Pgk object (6) | Phoe object (21) | Pyrg object (1) | Rpob object (7) | Tonb object (2) |
| 50 | Human | Fluid | Unknown | USA | JUXS01000001.1 | 671_KVAR | Leus object (1) | Pgi object (3) | Pgk object (6) | Phoe object (22) | Pyrg object (3) | Rpob object (8) | Tonb object (2) |
| 51 | Human | Tracheal Aspirate | Unknown | USA | JUTF01000001.1 | 780_KPNE | Leus object (1) | Pgi object (20) | Pgk object (1) | Phoe object (23) | Pyrg object (29) | Rpob object (9) | Tonb object (5) |
| 51 | Human | Tracheal Aspirate | Unknown | USA | JURI01000001.1 | 833_KPNE | Leus object (1) | Pgi object (20) | Pgk object (1) | Phoe object (23) | Pyrg object (29) | Rpob object (9) | Tonb object (5) |
| 51 | Human | Tracheal Aspirate | Unknown | USA | JURH01000001.1 | 834_KPNE | Leus object (1) | Pgi object (20) | Pgk object (1) | Phoe object (23) | Pyrg object (29) | Rpob object (9) | Tonb object (5) |
| 51 | Human | Tracheal Aspirate | Unknown | USA | JURG01000001.1 | 835_KPNE | Leus object (1) | Pgi object (20) | Pgk object (1) | Phoe object (23) | Pyrg object (29) | Rpob object (9) | Tonb object (5) |
| 51 | Human | Tracheal Aspirate | Unknown | USA | JURF01000001.1 | 836_KPNE | Leus object (1) | Pgi object (20) | Pgk object (1) | Phoe object (23) | Pyrg object (29) | Rpob object (9) | Tonb object (5) |
| 51 | Human | Tracheal Aspirate | Unknown | USA | JURE01000001.1 | 837_KPNE | Leus object (1) | Pgi object (20) | Pgk object (1) | Phoe object (23) | Pyrg object (29) | Rpob object (9) | Tonb object (5) |
| 51 | Human | Urine catheter | Unknown | USA | QIYM01000001.1 | WUSM_KV_10 | Leus object (1) | Pgi object (20) | Pgk object (1) | Phoe object (23) | Pyrg object (29) | Rpob object (9) | Tonb object (5) |
| 52 | Human | Urine, Catheterized | Unknown | USA | JUSW01000001.1 | 789_KVAR | Leus object (1) | Pgi object (4) | Pgk object (3) | Phoe object (24) | Pyrg object (11) | Rpob object (1) | Tonb object (2) |
| 53 | Human | Body fluid | Unknown | USA | PTGT01000001.1 | 1565/2503 | Leus object (1) | Pgi object (21) | Pgk object (1) | Phoe object (25) | Pyrg object (30) | Rpob object (11) | Tonb object (2) |
| 54 | Human | Unknown | Unknown | Vietnam | ERR025463 | 1892m | Leus object (1) | Pgi object (5) | Pgk object (5) | Phoe object (1) | Pyrg object (1) | Rpob object (1) | Tonb object (18) |
| 55 | Human | Missing | Negative | Mexico | This work | 11446 | Leus object (20) | Pgi object (22) | Pgk object (19) | Phoe object (26) | Pyrg object (31) | Rpob object (12) | Tonb object (19) |
| 56 | Human | Unknown | Unknown | Australia | ERS005747 | AJ026 | Leus object (21) | Pgi object (18) | Pgk object (3) | Phoe object (2) | Pyrg object (1) | Rpob object (13) | Tonb object (2) |
| 56 | Human | Unknown | Unknown | Australia | ERS005771 | AJ182 | Leus object (21) | Pgi object (18) | Pgk object (3) | Phoe object (2) | Pyrg object (1) | Rpob object (13) | Tonb object (2) |
| 56 | Human | Urine | Unknown | USA | QIYF01000001.1 | WUSM_KV_17 | Leus object (21) | Pgi object (18) | Pgk object (3) | Phoe object (2) | Pyrg object (1) | Rpob object (13) | Tonb object (2) |
| 56 | Human | Urine | Unknown | USA | QIXD01000001.1 | WUSM_KV_45 | Leus object (21) | Pgi object (18) | Pgk object (3) | Phoe object (2) | Pyrg object (1) | Rpob object (13) | Tonb object (2) |
| 57 | Human | Unknown | Unknown | Australia | ERS005754 | AJ135 | Leus object (22) | Pgi object (6) | Pgk object (6) | Phoe object (27) | Pyrg object (1) | Rpob object (1) | Tonb object (14) |
| 57 | Human | Blood | Unknown | Netherlands | JXJH01000001.1 | KP-21F | Leus object (22) | Pgi object (6) | Pgk object (6) | Phoe object (27) | Pyrg object (1) | Rpob object (1) | Tonb object (14) |
| 58 | Human | Unknown | Unknown | Australia | ERS005778 | AJ292 | Leus object (6) | Pgi object (4) | Pgk object (1) | Phoe object (28) | Pyrg object (32) | Rpob object (14) | Tonb object (2) |
| 59 | missing | Missing | Negative | USA | MPCI01000001.1 | AR_0016 | Leus object (23) | Pgi object (19) | Pgk object (5) | Phoe object (29) | Pyrg object (2) | Rpob object (1) | Tonb object (3) |
| 59 | Human | Urine | Unknown | USA | QIXW01000001.1 | WUSM_KV_26 | Leus object (23) | Pgi object (19) | Pgk object (5) | Phoe object (29) | Pyrg object (2) | Rpob object (1) | Tonb object (3) |
| 60 | Human | Blood | Unknown | Bangladesh | PJOO01000001.1 | BD.DM.165 | Leus object (11) | Pgi object (6) | Pgk object (5) | Phoe object (30) | Pyrg object (16) | Rpob object (4) | Tonb object (2) |
| 61 | Human | Missing | Unknown | USA | NGSO01000001.1 | BIDMC117 | Leus object (1) | Pgi object (9) | Pgk object (6) | Phoe object (1) | Pyrg object (13) | Rpob object (1) | Tonb object (2) |
| 61 | Human | Urine | Unknown | USA | QIXP01000001.1 | WUSM_KV_33 | Leus object (1) | Pgi object (9) | Pgk object (6) | Phoe object (1) | Pyrg object (13) | Rpob object (1) | Tonb object (2) |
| 62 | Human | Missing | Unknown | USA | NGSP01000001.1 | BIDMC118 | Leus object (1) | Pgi object (5) | Pgk object (5) | Phoe object (1) | Pyrg object (1) | Rpob object (1) | Tonb object (15) |
| 63 | Environmental | Soil | Unknown | Singapure | CP013985.1 | LMG23571 | Leus object (2) | Pgi object (5) | Pgk object (10) | Phoe object (1) | Pyrg object (1) | Rpob object (1) | Tonb object (20) |
| 64 | Plant | Roots of tall fescue | Negative | China | LOAR00000000 | D5A | Leus object (10) | Pgi object (9) | Pgk object (6) | Phoe object (1) | Pyrg object (32) | Rpob object (1) | Tonb object (2) |
| 64 | Human | Unknown | Unknown | Germany | UIDS01000001.1 | ID_24 | Leus object (10) | Pgi object (9) | Pgk object (6) | Phoe object (1) | Pyrg object (32) | Rpob object (1) | Tonb object (2) |
| 65 | Plant | Roots Maize | Unknown | China | NZ_CP016344.1 | E57-7 | Leus object (9) | Pgi object (3) | Pgk object (12) | Phoe object (31) | Pyrg object (3) | Rpob object (5) | Tonb object (2) |
| 66 | Environmental | River water | NDM-9 | South Korea | NZ_CP017284.1 | GJ1 | Leus object (1) | Pgi object (3) | Pgk object (6) | Phoe object (8) | Pyrg object (11) | Rpob object (1) | Tonb object (2) |
| 66 | Environmental | River water | NDM-9 | South Korea | NZ_CP017849.1 | GJ2 | Leus object (1) | Pgi object (3) | Pgk object (6) | Phoe object (8) | Pyrg object (11) | Rpob object (1) | Tonb object (2) |
| 66 | Environmental | River water | CTX-M-65/NDM-9 | South Korea | NZ_CP017289.1 | GJ3 | Leus object (1) | Pgi object (3) | Pgk object (6) | Phoe object (8) | Pyrg object (11) | Rpob object (1) | Tonb object (2) |
| 67 | Human | Unknown | Unknown | China | MOSU00000000 | H39 | Leus object (24) | Pgi object (3) | Pgk object (1) | Phoe object (32) | Pyrg object (33) | Rpob object (15) | Tonb object (3) |
| 68 | Human | Unknown | Unknown | Germany | UIDY01000001.1 | ID_16 | Leus object (13) | Pgi object (23) | Pgk object (5) | Phoe object (33) | Pyrg object (19) | Rpob object (1) | Tonb object (2) |
| 68 | Human | Unknown | Unknown | Germany | UIDU01000001.1 | ID_18 | Leus object (13) | Pgi object (23) | Pgk object (5) | Phoe object (33) | Pyrg object (19) | Rpob object (1) | Tonb object (2) |
| 68 | Human | Unknown | Unknown | Germany | UIEF01000001.1 | ID_19 | Leus object (13) | Pgi object (23) | Pgk object (5) | Phoe object (33) | Pyrg object (19) | Rpob object (1) | Tonb object (2) |
| 69 | Human | Unknown | Unknown | Germany | UIFG01000001.1 | ID_43 | Leus object (13) | Pgi object (23) | Pgk object (5) | Phoe object (34) | Pyrg object (19) | Rpob object (1) | Tonb object (2) |
| 70 | Human | Unknown | Unknown | Germany | UIFD01000001.1 | ID_49 | Leus object (1) | Pgi object (18) | Pgk object (6) | Phoe object (1) | Pyrg object (34) | Rpob object (13) | Tonb object (21) |
| 71 | Human | Blood | Unknown | China | NPGY01000001.1 | K2631 | Leus object (25) | Pgi object (21) | Pgk object (3) | Phoe object (35) | Pyrg object (35) | Rpob object (1) | Tonb object (22) |
| 72 | Human | Wound swab | Unknown | Tanzania | OVDF01000001.1 | KCRI-152E | Leus object (26) | Pgi object (10) | Pgk object (1) | Phoe object (36) | Pyrg object (1) | Rpob object (13) | Tonb object (2) |
| 73 | Human | Catheter | Unknown | Colombia | MSZI01000001.1 | KP007 | Leus object (9) | Pgi object (4) | Pgk object (6) | Phoe object (24) | Pyrg object (1) | Rpob object (1) | Tonb object (23) |
| 74 | Human | Urine | SHV-12 | USA | SRX2681305 | KPN325 | Leus object (19) | Pgi object (5) | Pgk object (5) | Phoe object (6) | Pyrg object (10) | Rpob object (1) | Tonb object (22) |
| 75 | Human | Blood | SHV-12 | USA | SRX2680563 | KPN458 | Leus object (11) | Pgi object (9) | Pgk object (6) | Phoe object (20) | Pyrg object (1) | Rpob object (13) | Tonb object (2) |
| 76 | Human | Urine | CTX-M-15 | USA | SRX2681541 | KPN807 | Leus object (27) | Pgi object (4) | Pgk object (3) | Phoe object (1) | Pyrg object (35) | Rpob object (1) | Tonb object (24) |
| 77 | Human | Respiratory | KPC-2 | USA | SRX2681803 | KPN1401 | Leus object (1) | Pgi object (1) | Pgk object (20) | Phoe object (1) | Pyrg object (1) | Rpob object (11) | Tonb object (25) |
| 77 | Human | Respiratory | KPC-2 | USA | SRX2681790 | KPN1415 | Leus object (1) | Pgi object (1) | Pgk object (20) | Phoe object (1) | Pyrg object (1) | Rpob object (11) | Tonb object (25) |
| 78 | Human | Urine | CTX-M-15/NDM-1 | USA | SRX2681713 | KPN1481 | Leus object (28) | Pgi object (24) | Pgk object (5) | Phoe object (37) | Pyrg object (36) | Rpob object (1) | Tonb object (4) |
| 79 | Human | Wound | SHV-12 | USA | SRX2681646 | KPN1556 | Leus object (11) | Pgi object (1) | Pgk object (3) | Phoe object (1) | Pyrg object (11) | Rpob object (1) | Tonb object (2) |
| 79 | Human | Urine | Unknown | USA | QIWX01000001.1 | WUSM_KV_51 | Leus object (11) | Pgi object (1) | Pgk object (3) | Phoe object (1) | Pyrg object (11) | Rpob object (1) | Tonb object (2) |
| 80 | Human | Urine | SHV-12, SHV-66 | USA | SRX2681570 | KPN1751 | Leus object (1) | Pgi object (6) | Pgk object (10) | Phoe object (3) | Pyrg object (37) | Rpob object (1) | Tonb object (2) |
| 81 | Human | Urine | Unknown | India | LZGB01000001.1 | KV093 | Leus object (15) | Pgi object (6) | Pgk object (1) | Phoe object (1) | Pyrg object (38) | Rpob object (14) | Tonb object (26) |
| 82 | Plant/Fungi | Mycorrhiza of Pisolithus tinctorius | Unknown | China | LQMR01000001.1 | KV321 | Leus object (29) | Pgi object (4) | Pgk object (6) | Phoe object (1) | Pyrg object (1) | Rpob object (14) | Tonb object (15) |
| 83 | Human | Catheter | Negative | Mexico | This work | 9635 | Leus object (2) | Pgi object (6) | Pgk object (12) | Phoe object (38) | Pyrg object (39) | Rpob object (16) | Tonb object (4) |
| 84 | Plant | Root of a sugarcane plant | Negative | Mexico | FLLH01000001 | KvMx2 | Leus object (30) | Pgi object (25) | Pgk object (21) | Phoe object (39) | Pyrg object (40) | Rpob object (17) | Tonb object (27) |
| 85 | Human | Faeces | Unknown | China | NLDD01000001 | L18 | Leus object (31) | Pgi object (24) | Pgk object (22) | Phoe object (40) | Pyrg object (41) | Rpob object (1) | Tonb object (28) |
| 86 | Environmental | Industrial effluent | Unknown | Pakistan | MSCS01000001 | MB351 | Leus object (11) | Pgi object (26) | Pgk object (2) | Phoe object (41) | Pyrg object (1) | Rpob object (1) | Tonb object (2) |
| 87 | Animal | Bovine | Unknown | Canada | LFYK01000000 | NL58 | Leus object (1) | Pgi object (10) | Pgk object (14) | Phoe object (42) | Pyrg object (2) | Rpob object (13) | Tonb object (2) |
| 87 | Animal | Bovine | Unknown | Canada | LGAW01000000 | NL49 | Leus object (1) | Pgi object (10) | Pgk object (14) | Phoe object (42) | Pyrg object (2) | Rpob object (13) | Tonb object (2) |
| 88 | Animal | Bovine - Intestinal | Unknown | USA | ERS011908 | QMP_B2-288 | Leus object (11) | Pgi object (27) | Pgk object (5) | Phoe object (41) | Pyrg object (1) | Rpob object (1) | Tonb object (2) |
| 89 | Animal | Bovine - Intestinal | Unknown | USA | ERS011920 | QMP_B2-340 | Leus object (13) | Pgi object (28) | Pgk object (3) | Phoe object (9) | Pyrg object (1) | Rpob object (1) | Tonb object (2) |
| 89 | Animal | Bovine - Intestinal | Unknown | USA | ERS011926 | QMP_B2-483 | Leus object (13) | Pgi object (28) | Pgk object (3) | Phoe object (9) | Pyrg object (1) | Rpob object (1) | Tonb object (2) |
| 90 | Animal | Bovine - Intestinal | Unknown | USA | ERS011925 | QMP_B2-481 | Leus object (2) | Pgi object (1) | Pgk object (3) | Phoe object (38) | Pyrg object (4) | Rpob object (18) | Tonb object (13) |
| 91 | Animal | Bovine - Intestinal | Unknown | USA | ERS011933 | QMP_M1-043 | Leus object (1) | Pgi object (17) | Pgk object (1) | Phoe object (25) | Pyrg object (42) | Rpob object (1) | Tonb object (2) |
| 92 | Animal | Unknown | Unknown | USA | ERS011961 | QMP_M1-428 | Leus object (32) | Pgi object (29) | Pgk object (3) | Phoe object (24) | Pyrg object (35) | Rpob object (19) | Tonb object (4) |
| 93 | Animal | Urine | Unknown | USA | ERS011977 | QMP_M1-893 | Leus object (33) | Pgi object (6) | Pgk object (1) | Phoe object (11) | Pyrg object (43) | Rpob object (1) | Tonb object (29) |
| 94 | Human | Missing | Unknown | China | PWAV01000001.1 | SCKV020062 | Leus object (1) | Pgi object (6) | Pgk object (23) | Phoe object (43) | Pyrg object (1) | Rpob object (1) | Tonb object (2) |
| 94 | Human | Missing | Unknown | China | PWAU01000001.1 | SCKV020067 | Leus object (1) | Pgi object (6) | Pgk object (23) | Phoe object (43) | Pyrg object (1) | Rpob object (1) | Tonb object (2) |
| 94 | Human | Missing | Unknown | China | PWAT01000001.1 | SCKV020069 | Leus object (1) | Pgi object (6) | Pgk object (23) | Phoe object (43) | Pyrg object (1) | Rpob object (1) | Tonb object (2) |
| 94 | Human | Unknown | Unknown | China | NZ_CP028555.1 | WCHKP19 | Leus object (1) | Pgi object (6) | Pgk object (23) | Phoe object (43) | Pyrg object (1) | Rpob object (1) | Tonb object (2) |
| 95 | Human | Missing | Unknown | China | NWEW01000001.1 | SCKV020148 | Leus object (1) | Pgi object (3) | Pgk object (3) | Phoe object (2) | Pyrg object (3) | Rpob object (20) | Tonb object (3) |
| 96 | Human | Missing | Unknown | South Africa | NXJG01000001.1 | ST-1791-KOO1 | Leus object (34) | Pgi object (6) | Pgk object (6) | Phoe object (1) | Pyrg object (35) | Rpob object (1) | Tonb object (30) |
| 97 | Environmental | GM-anode biofilm | Unknown | Missing | DBMQ01000001.1 | UBA694 | Leus object (18) | Pgi object (24) | Pgk object (5) | Phoe object (1) | Pyrg object (1) | Rpob object (1) | Tonb object (2) |
| 98 | Environmental | Metal | Unknown | USA | DFCX01000001.1 | UBA3043 | Leus object (11) | Pgi object (30) | Pgk object (6) | Phoe object (1) | Pyrg object (35) | Rpob object (1) | Tonb object (30) |
| 99 | Environmental | Metal/Plastic | Unknown | USA | DFSA01000001.1 | UBA3449 | Leus object (11) | Pgi object (4) | Pgk object (10) | Phoe object (6) | Pyrg object (44) | Rpob object (8) | Tonb object (31) |
| 100 | Environmental | Metal/Plastic | Unknown | USA | DGAC01000001.1 | UBA4040 | Leus object (13) | Pgi object (24) | Pgk object (6) | Phoe object (30) | Pyrg object (1) | Rpob object (1) | Tonb object (2) |
| 101 | Human | Unknown | Unknown | China | NZ_CP027064.2 | WCHKV030666 | Leus object (28) | Pgi object (31) | Pgk object (5) | Phoe object (37) | Pyrg object (1) | Rpob object (1) | Tonb object (2) |
| 102 | Human | Unknown | Unknown | China | NWEJ01000001.1 | WCHKV030937 | Leus object (35) | Pgi object (4) | Pgk object (6) | Phoe object (1) | Pyrg object (1) | Rpob object (1) | Tonb object (9) |
| 103 | Human | Urine | Unknown | USA | QIYV01000001.1 | WUSM_KV_01 | Leus object (6) | Pgi object (24) | Pgk object (5) | Phoe object (1) | Pyrg object (1) | Rpob object (1) | Tonb object (28) |
| 104 | Human | Unknown | Unknown | USA | QIYU01000001.1 | WUSM_KV_02 | Leus object (2) | Pgi object (5) | Pgk object (6) | Phoe object (3) | Pyrg object (5) | Rpob object (1) | Tonb object (5) |
| 105 | Human | Aspirate, left breast | Unknown | USA | QIYT01000001.1 | WUSM_KV_03 | Leus object (23) | Pgi object (19) | Pgk object (2) | Phoe object (8) | Pyrg object (45) | Rpob object (1) | Tonb object (2) |
| 106 | Human | Tracheal Aspirate | Unknown | USA | QIYS01000001.1 | WUSM_KV_04 | Leus object (21) | Pgi object (18) | Pgk object (3) | Phoe object (2) | Pyrg object (1) | Rpob object (13) | Tonb object (32) |
| 107 | Human | Sputum | Unknown | USA | QIYQ01000001.1 | WUSM_KV_06 | Leus object (36) | Pgi object (6) | Pgk object (10) | Phoe object (3) | Pyrg object (37) | Rpob object (1) | Tonb object (2) |
| 107 | Human | Urine | Unknown | USA | QIXK01000001.1 | WUSM_KV_38 | Leus object (36) | Pgi object (6) | Pgk object (10) | Phoe object (3) | Pyrg object (37) | Rpob object (1) | Tonb object (2) |
| 107 | Human | Wound | Unknown | USA | QIWZ01000001.1 | WUSM_KV_49 | Leus object (36) | Pgi object (6) | Pgk object (10) | Phoe object (3) | Pyrg object (37) | Rpob object (1) | Tonb object (2) |
| 108 | Human | Urine | Unknown | USA | QIYP01000001.1 | WUSM_KV_07 | Leus object (2) | Pgi object (27) | Pgk object (6) | Phoe object (2) | Pyrg object (1) | Rpob object (13) | Tonb object (15) |
| 109 | Human | Drainage, left groin | Unknown | USA | QIYO01000001.1 | WUSM_KV_08 | Leus object (2) | Pgi object (6) | Pgk object (1) | Phoe object (25) | Pyrg object (32) | Rpob object (11) | Tonb object (1) |
| 109 | Human | Tibia | Unknown | USA | QIYL01000001.1 | WUSM_KV_11 | Leus object (2) | Pgi object (6) | Pgk object (1) | Phoe object (25) | Pyrg object (32) | Rpob object (11) | Tonb object (1) |
| 110 | Human | Urine | Unknown | USA | QIYK01000001.1 | WUSM_KV_12 | Leus object (5) | Pgi object (32) | Pgk object (5) | Phoe object (44) | Pyrg object (46) | Rpob object (13) | Tonb object (2) |
| 111 | Human | Urine | Unknown | USA | QIYJ01000001.1 | WUSM_KV_13 | Leus object (37) | Pgi object (33) | Pgk object (1) | Phoe object (3) | Pyrg object (37) | Rpob object (7) | Tonb object (33) |
| 112 | Human | Blood | Unknown | USA | QIYI01000001.1 | WUSM_KV_14 | Leus object (38) | Pgi object (34) | Pgk object (24) | Phoe object (45) | Pyrg object (47) | Rpob object (1) | Tonb object (2) |
| 112 | Human | Urine | Unknown | USA | QIYD01000001.1 | WUSM_KV_19 | Leus object (38) | Pgi object (34) | Pgk object (24) | Phoe object (45) | Pyrg object (47) | Rpob object (1) | Tonb object (2) |
| 113 | Human | Wound, drain right lower quadrant | Unknown | USA | QIYH01000001.1 | WUSM_KV_15 | Leus object (17) | Pgi object (17) | Pgk object (1) | Phoe object (1) | Pyrg object (24) | Rpob object (1) | Tonb object (16) |
| 114 | Human | Blood | Unknown | USA | QIYG01000001.1 | WUSM_KV_16 | Leus object (39) | Pgi object (1) | Pgk object (1) | Phoe object (1) | Pyrg object (1) | Rpob object (1) | Tonb object (1) |
| 115 | Human | Urine | Unknown | USA | QIYE01000001.1 | WUSM_KV_18 | Leus object (11) | Pgi object (1) | Pgk object (6) | Phoe object (46) | Pyrg object (48) | Rpob object (2) | Tonb object (2) |
| 116 | Human | Urine | Unknown | USA | QIYB01000001.1 | WUSM_KV_21 | Leus object (40) | Pgi object (27) | Pgk object (6) | Phoe object (3) | Pyrg object (1) | Rpob object (13) | Tonb object (15) |
| 117 | Human | Urine | Unknown | USA | QIYA01000001.1 | WUSM_KV_22 | Leus object (41) | Pgi object (5) | Pgk object (6) | Phoe object (8) | Pyrg object (4) | Rpob object (2) | Tonb object (2) |
| 117 | Human | Urine | Unknown | USA | QIXZ01000001.1 | WUSM_KV_23 | Leus object (41) | Pgi object (5) | Pgk object (6) | Phoe object (8) | Pyrg object (4) | Rpob object (2) | Tonb object (2) |
| 117 | Human | Blood | Unknown | USA | QIXY01000001.1 | WUSM_KV_24 | Leus object (41) | Pgi object (5) | Pgk object (6) | Phoe object (8) | Pyrg object (4) | Rpob object (2) | Tonb object (2) |
| 118 | Human | Blood | Unknown | USA | QIXX01000001.1 | WUSM_KV_25 | Leus object (14) | Pgi object (1) | Pgk object (6) | Phoe object (1) | Pyrg object (36) | Rpob object (1) | Tonb object (15) |
| 118 | Human | Urine | Unknown | USA | QIXN01000001.1 | WUSM_KV_35 | Leus object (14) | Pgi object (1) | Pgk object (6) | Phoe object (1) | Pyrg object (36) | Rpob object (1) | Tonb object (15) |
| 119 | Human | Urine | Unknown | USA | QIXV01000001.1 | WUSM_KV_27 | Leus object (1) | Pgi object (28) | Pgk object (6) | Phoe object (43) | Pyrg object (49) | Rpob object (13) | Tonb object (2) |
| 120 | Human | Urine | Unknown | USA | QIXU01000001.1 | WUSM_KV_28 | Leus object (11) | Pgi object (23) | Pgk object (6) | Phoe object (1) | Pyrg object (35) | Rpob object (1) | Tonb object (3) |
| 121 | Human | Urine | Unknown | USA | QIXT01000001.1 | WUSM_KV_29 | Leus object (2) | Pgi object (4) | Pgk object (6) | Phoe object (24) | Pyrg object (4) | Rpob object (21) | Tonb object (2) |
| 121 | Human | Urine | Unknown | USA | QIXQ01000001.1 | WUSM_KV_32 | Leus object (2) | Pgi object (4) | Pgk object (6) | Phoe object (24) | Pyrg object (4) | Rpob object (21) | Tonb object (2) |
| 122 | Human | Urine | Unknown | USA | QIXR01000001.1 | WUSM_KV_31 | Leus object (42) | Pgi object (1) | Pgk object (3) | Phoe object (47) | Pyrg object (1) | Rpob object (7) | Tonb object (30) |
| 123 | Human | Urine | Unknown | USA | QIXL01000001.1 | WUSM_KV_37 | Leus object (41) | Pgi object (5) | Pgk object (6) | Phoe object (8) | Pyrg object (35) | Rpob object (2) | Tonb object (34) |
| 124 | Human | Urine | Unknown | USA | QIXJ01000001.1 | WUSM_KV_39 | Leus object (1) | Pgi object (18) | Pgk object (12) | Phoe object (1) | Pyrg object (34) | Rpob object (13) | Tonb object (21) |
| 125 | Human | Urine | Unknown | USA | QIXH01000001.1 | WUSM_KV_41 | Leus object (35) | Pgi object (27) | Pgk object (6) | Phoe object (3) | Pyrg object (1) | Rpob object (13) | Tonb object (15) |
| 126 | Human | Urine | Unknown | USA | QIXE01000001.1 | WUSM_KV_44 | Leus object (38) | Pgi object (35) | Pgk object (1) | Phoe object (1) | Pyrg object (35) | Rpob object (1) | Tonb object (2) |
| 127 | Human | Urine | Unknown | USA | QIXA01000001.1 | WUSM_KV_48 | Leus object (11) | Pgi object (9) | Pgk object (6) | Phoe object (20) | Pyrg object (1) | Rpob object (13) | Tonb object (35) |
| 128 | Human | Bronch wash | Unknown | USA | QIWY01000001.1 | WUSM_KV_50 | Leus object (5) | Pgi object (8) | Pgk object (7) | Phoe object (40) | Pyrg object (11) | Rpob object (11) | Tonb object (10) |
| 129 | Human | Urine | Unknown | USA | QIWW01000001.1 | WUSM_KV_52 | Leus object (1) | Pgi object (3) | Pgk object (12) | Phoe object (1) | Pyrg object (1) | Rpob object (10) | Tonb object (2) |
| 130 | Human | Urine | Unknown | USA | QIWV01000001.1 | WUSM_KV_53 | Leus object (9) | Pgi object (4) | Pgk object (5) | Phoe object (1) | Pyrg object (32) | Rpob object (13) | Tonb object (2) |
| 131 | Human | Blood | Unknown | USA | QIWU01000001.1 | WUSM_KV_54 | Leus object (43) | Pgi object (1) | Pgk object (3) | Phoe object (38) | Pyrg object (4) | Rpob object (1) | Tonb object (4) |
| 132 | Human | BAL | Unknown | USA | QIWT01000001.1 | WUSM_KV_55 | Leus object (1) | Pgi object (19) | Pgk object (1) | Phoe object (38) | Pyrg object (1) | Rpob object (1) | Tonb object (36) |
| 133 | Human | UR CVS | Unknown | USA | QIVS01000001.1 | WUSM_KV_82 | Leus object (1) | Pgi object (10) | Pgk object (6) | Phoe object (45) | Pyrg object (22) | Rpob object (7) | Tonb object (2) |
| 134 | Human | Blood | Unknown | USA | QIVD01000001.1 | WUSM_KV_97 | Leus object (1) | Pgi object (36) | Pgk object (1) | Phoe object (48) | Pyrg object (35) | Rpob object (1) | Tonb object (37) |
| 135 | Human | Blood | Unknown | USA | QIUP01000001.1 | WUSM_KV_111 | Leus object (13) | Pgi object (6) | Pgk object (6) | Phoe object (41) | Pyrg object (50) | Rpob object (2) | Tonb object (2) |
| 136 | Human | Missing | Unknown | USA | PGIO01000001.1 | YD626-2 | Leus object (1) | Pgi object (4) | Pgk object (5) | Phoe object (6) | Pyrg object (9) | Rpob object (1) | Tonb object (9) |
| 60 | Human | Blood | CTX-M-15 | Bangladesh | QUAA01000001 | BD_DM_32 | Leus object (11) | Pgi object (6) | Pgk object (5) | Phoe object (30) | Pyrg object (16) | Rpob object (4) | Tonb object (2) |
| 60 | Human | Blood | CTX-M-15 | Bangladesh | QTZQ01000001.1 | BD_DM_33 | Leus object (11) | Pgi object (6) | Pgk object (5) | Phoe object (30) | Pyrg object (16) | Rpob object (4) | Tonb object (2) |
| 60 | Human | Blood | CTX-M-15/NDM-1 | Bangladesh | QTZR01000001.1 | BD_DM_97 | Leus object (11) | Pgi object (6) | Pgk object (5) | Phoe object (30) | Pyrg object (16) | Rpob object (4) | Tonb object (2) |
| 60 | Human | Blood | CTX-M-15/NDM-1 | Bangladesh | QTZS01000001.1 | BD_DM_115 | Leus object (11) | Pgi object (6) | Pgk object (5) | Phoe object (30) | Pyrg object (16) | Rpob object (4) | Tonb object (2) |
| 60 | Human | Blood | CTX-M-15/NDM-1 | Bangladesh | QTZT01000001.1 | BD_DM_166 | Leus object (11) | Pgi object (6) | Pgk object (5) | Phoe object (30) | Pyrg object (16) | Rpob object (4) | Tonb object (2) |
| 60 | Human | Blood | CTX-M-15/NDM-1 | Bangladesh | QTZU01000001.1 | BD_DM_167 | Leus object (11) | Pgi object (6) | Pgk object (5) | Phoe object (30) | Pyrg object (16) | Rpob object (4) | Tonb object (2) |
| 60 | Human | Blood | CTX-M-15 | Bangladesh | QTZV01000001.1 | BD_DM_169 | Leus object (11) | Pgi object (6) | Pgk object (5) | Phoe object (30) | Pyrg object (16) | Rpob object (4) | Tonb object (2) |
| 60 | Human | Blood | CTX-M-15 | Bangladesh | QTZW01000001.1 | BD_DM_322 | Leus object (11) | Pgi object (6) | Pgk object (5) | Phoe object (30) | Pyrg object (16) | Rpob object (4) | Tonb object (2) |
| 60 | Human | Blood | CTX-M-15 | Bangladesh | QTZX01000001.1 | BD_DM_323 | Leus object (11) | Pgi object (6) | Pgk object (5) | Phoe object (30) | Pyrg object (16) | Rpob object (4) | Tonb object (2) |
| 60 | Human | Blood | CTX-M-15 | Bangladesh | QTZY01000001.1 | BD_DM_395 | Leus object (11) | Pgi object (6) | Pgk object (5) | Phoe object (30) | Pyrg object (16) | Rpob object (4) | Tonb object (2) |
Who is Klebsiella variicola?
K. variicola is a Gram-negative, facultative anaerobic, non-spore-forming, non-motile rod. Its form is circular, convex and smooth colonies and grows around 11-41ºC. K. variicola was initially identified as endophyte in plants and pathogen in humans. However, according to different reports it could be considered ubiquitous in nature. According to its description in the literature, K. variicola can be found in soil, water, plants, insects, humans and animals. In all of them K. variicola plays different roles as; endophyte in plants, as pathogen in humans and animals and symbiont in insects.Recent publication about K. variicola:
Genome misclassification of Klebsiella variicola and Klebsiella quasipneumoniae isolated from plants, animals and humans.Esperanza Martínez-Romero, Nadia Rodriguez-Medina, Marilu Beltrán-Rojel, Jesús Silva-Sanchez, Humberto Barrios-Camacho, Ernesto Perez-Rueda, Ulises Garza-Ramos. Salud Publica de Mexico. 2018. 60;1 :29-40. Download
Klebsiella variicola and Klebsiella quasipneumoniae genomic analysis provides insights into their capacity to adapt to clinical and plant settings.
Esperanza Martínez-Romero, Nadia Rodriguez-Medina, Marilu Beltrán-Rojel, Jeiry Toribio-Jimenez, Ulises Garza-Ramos. Salud Publica de Mexico. 2018. 60;1 :56-62. Download
Hypervirulence and hypermucoviscosity: Two different but complementary Klebsiella spp. phenotypes?
Catalán-Nájera JC, Garza-Ramos U, Barrios-Camacho H. Virulence. 2017. Oct 3;8(7):1111-1123. Download
Identification and Characterization of Imipenem-Resistant Klebsiella pneumoniae and Susceptible Klebsiella variicola Isolates Obtained from the Same Patient.
Garza-Ramos U*, Moreno-Dominguez S, Hernández-Castro R, Silva-Sanchez J, Barrios H, Reyna-Flores F, Sanchez-Perez A, Carrillo-Casas EM, Sanchez-León MC, Moncada-Barron D.. Microb Drug Resist. 2016 Apr;22(3):179-84. Download
Draft genome sequences of the Klebsiella variicola plant isolates.
Martinez-Romero Esperanza, Jesús Silva-Sanchez, Humberto Barrios, Nadia Rodriguez-Medina, Jesús Martínez-Barnetche, Juan Téllez-Sosa, Rosa Elena Gómez-Barreto, Ulises Garza-Ramos. Genome Announc. 2015 Sep 10;3(5). Download
Draft genome sequence of the first hypermucoviscous Klebsiella variicola clinical isolate.
Ulises Garza-Ramos; Jesus Silva-Sanchez, Humberto Barrios, Nadia Rodriguez-Medina, Jesus Martínez-Barnetche, Veronica Andrade. Genome Announc. 2015 Apr 9;3(2). Download
Development of a multiplex-PCR probe system for proper identification of Klebsiella variicola.
Ulises Garza-Ramos, Jesús Silva-Sánchez, Esperanza Martínez-Romero, Perla Tinoco, Marisol Pina-Gonzales, Humberto Barrios, Jesús Martínez-Barnetche, Rosa elena Gomez-Barreto, Juan Tellez. BMC Microbiol. 2015 Dec;15(1):396. Download
SUBMISSIONS
In order to function as such a resource and to maintain the quality of the data, the databases are hand curated, and all entries will be checked before final entry into the main database.To submit your data please contact the curator directly.
email: ulises.garza @insp.mx